------- SECIS element -- id:1 -- grade:B ----
 Chromosome = CM007959.1:subseq_45663062,138568_ Strand = - Positions = 113279 - 113210
 Found by:  Infernal (score=16.34) Covels (score=4.45)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -15.02

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((({(((.......([[{((((({((((------(.........)))))})))))}]])..--....)))})))..
 target  GUGUGUGUUUGGACCAUGAUAGUUUGUUGG------UGAUGUGGAAACCAAGGAACUUGAAGC--UCUCGACUCGCUC
                         ****                                     ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = CM007959.1:subseq_45663062,138568_ Strand = + Positions = 44295 - 44342
 Found by:  Infernal (score=12.61)
 Stem2 length = 12   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -11.19

         ..(((((((.......((((((((((.(((((................))))).))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugcccggc
         ----------------{[[(((((((((((((................)))))))))))))]]}-----------------
 target  ----------------UGAAUUUGUCCAAUAGAAACUCUUGUUUGCCAUUAUUGGACAAAUGAU-----------------
                         ****            ^^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = CM007959.1:subseq_45663062,138568_ Strand = + Positions = 84125 - 84217
 Found by:  Infernal (score=10.48)
 Stem2 length = 8   Apical loop length = 22   Insertion in stem2 = 2, 0
 Free Energy = -10.45

         ..(((((((...........((((((((((.((..(((....................))))).)))))))))).............)))))))..
 model   uucggucaugcg----UuaAUGAcGgccug-gc--ccuAAAcC-----cuuuuuggggcgggc-caggcCuGAUGuu----u-uuucaugaccggc
         .((((({(((..........{[[{(((({({-(..((......................)))-})}))))}]]}.........-..)))}))))).
 target  CCCUGAACAGCCAUCUUGAAUGACGGGGCGC-CAGUGGAAAGUCUCUAAGAUCUGCAGACAG-UUUCUCCUGACGAAAAACAA-CCUUGAUCAGGA
                             ****              ^^^                             ****